spykeutils
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Usage
Examples
Creating the sample data
PSTH and ISI
Spike Density Estimation
Signal Plot
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spykeutils package
Subpackages
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Version 0.4.1
Version 0.4.0
Version 0.3.0
Version 0.2.1
Version 0.2.0
Acknowledgements
spykeutils
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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V
A
aligned_spike_trains() (in module spykeutils.rate_estimation)
analog_signal_array_to_analog_signals() (in module spykeutils.conversions)
analog_signal_arrays() (DataProvider method)
analog_signal_arrays_by_channelgroup() (DataProvider method)
analog_signal_arrays_by_channelgroup_and_segment() (DataProvider method)
analog_signal_arrays_by_segment() (DataProvider method)
analog_signal_arrays_by_segment_and_channelgroup() (DataProvider method)
analog_signals() (DataProvider method)
analog_signals_by_channel() (DataProvider method)
analog_signals_by_channel_and_segment() (DataProvider method)
analog_signals_by_segment() (DataProvider method)
analog_signals_by_segment_and_channel() (DataProvider method)
AnalysisPlugin (class in spykeutils.plugin.analysis_plugin)
apply_to_dict() (in module spykeutils.tools)
as_kernel_of_size() (in module spykeutils.signal_processing)
B
begin() (ProgressIndicator method)
bin_spike_trains() (in module spykeutils.tools)
blocks() (DataProvider method)
boundary_enclosing_at_least() (CausalDecayingExpKernel method)
(GaussianKernel method)
(Kernel method)
(LaplacianKernel method)
(RectangularKernel method)
(TriangularKernel method)
C
calculate_refperiod_fp() (in module spykeutils.sorting_quality_assesment)
CancelException
CausalDecayingExpKernel (class in spykeutils.signal_processing)
collapsed_spike_trains() (in module spykeutils.rate_estimation)
concatenate_spike_trains() (in module spykeutils.tools)
configure() (AnalysisPlugin method)
correlogram() (in module spykeutils.correlations)
cs_dist() (in module spykeutils.spike_train_metrics)
D
data_dict() (DataProvider method)
DataProvider (class in spykeutils.plugin.data_provider)
discretize_kernel() (in module spykeutils.signal_processing)
done() (ProgressIndicator method)
E
epoch_array_to_epochs() (in module spykeutils.conversions)
epoch_arrays() (DataProvider method)
epochs() (DataProvider method)
evaluate() (CausalDecayingExpKernel static method)
(GaussianKernel static method)
(LaplacianKernel static method)
(RectangularKernel static method)
(TriangularKernel static method)
event_array_to_events() (in module spykeutils.conversions)
event_arrays() (DataProvider method)
event_synchronization() (in module spykeutils.spike_train_metrics)
events() (DataProvider method)
extract_spikes() (in module spykeutils.tools)
F
from_data() (spykeutils.plugin.data_provider.DataProvider class method)
G
GaussianKernel (class in spykeutils.signal_processing)
gen_homogeneous_poisson() (in module spykeutils.spike_train_generation)
gen_inhomogeneous_poisson() (in module spykeutils.spike_train_generation)
get_name() (AnalysisPlugin method)
get_parameters() (AnalysisPlugin method)
get_refperiod_violations() (in module spykeutils.sorting_quality_assesment)
H
hunter_milton_similarity() (in module spykeutils.spike_train_metrics)
I
ignores_cancel() (in module spykeutils.progress_indicator)
is_symmetric() (Kernel method)
(KernelFromFunction method)
(SymmetricKernel method)
K
Kernel (class in spykeutils.signal_processing)
KernelFromFunction (class in spykeutils.signal_processing)
L
labeled_epochs() (DataProvider method)
labeled_events() (DataProvider method)
LaplacianKernel (class in spykeutils.signal_processing)
load() (AnalysisPlugin method)
M
maximum_spike_train_interval() (in module spykeutils.tools)
minimum_spike_train_interval() (in module spykeutils.tools)
N
norm_dist() (in module spykeutils.spike_train_metrics)
normalization_factor() (CausalDecayingExpKernel method)
(GaussianKernel method)
(Kernel method)
(LaplacianKernel method)
(RectangularKernel method)
(TriangularKernel method)
O
optimal_gauss_kernel_size() (in module spykeutils.rate_estimation)
overlap_fp_fn() (in module spykeutils.sorting_quality_assesment)
P
ProgressIndicator (class in spykeutils.progress_indicator)
psth() (in module spykeutils.rate_estimation)
R
recording_channel_groups() (DataProvider method)
recording_channels() (DataProvider method)
RectangularKernel (class in spykeutils.signal_processing)
refresh_view() (DataProvider method)
remove_from_hierarchy() (in module spykeutils.tools)
S
save() (AnalysisPlugin method)
schreiber_similarity() (in module spykeutils.spike_train_metrics)
segments() (DataProvider method)
selection_blocks() (DataProvider method)
set_parameters() (AnalysisPlugin method)
set_status() (ProgressIndicator method)
set_ticks() (ProgressIndicator method)
smooth() (in module spykeutils.signal_processing)
spike_amplitude_histogram() (in module spykeutils.stationarity)
spike_density_estimation() (in module spykeutils.rate_estimation)
spike_train_to_spikes() (in module spykeutils.conversions)
spike_trains() (DataProvider method)
spike_trains_by_segment() (DataProvider method)
spike_trains_by_segment_and_unit() (DataProvider method)
spike_trains_by_unit() (DataProvider method)
spike_trains_by_unit_and_segment() (DataProvider method)
spikes() (DataProvider method)
spikes_by_segment() (DataProvider method)
spikes_by_segment_and_unit() (DataProvider method)
spikes_by_unit() (DataProvider method)
spikes_by_unit_and_segment() (DataProvider method)
spikes_to_spike_train() (in module spykeutils.conversions)
SpykeException (class in spykeutils)
spykeutils (module)
spykeutils.conversions (module)
spykeutils.correlations (module)
spykeutils.plugin (module)
spykeutils.plugin.analysis_plugin (module)
spykeutils.plugin.data_provider (module)
spykeutils.plugin.gui_data (module)
spykeutils.progress_indicator (module)
spykeutils.rate_estimation (module)
spykeutils.signal_processing (module)
spykeutils.sorting_quality_assesment (module)
spykeutils.spike_train_generation (module)
spykeutils.spike_train_metrics (module)
spykeutils.stationarity (module)
spykeutils.tools (module)
st_convolve() (in module spykeutils.signal_processing)
st_inner() (in module spykeutils.spike_train_metrics)
st_norm() (in module spykeutils.spike_train_metrics)
start() (AnalysisPlugin method)
step() (ProgressIndicator method)
summed_dist_matrix() (Kernel method)
(LaplacianKernel method)
(SymmetricKernel method)
SymmetricKernel (class in spykeutils.signal_processing)
T
TriangularKernel (class in spykeutils.signal_processing)
U
units() (DataProvider method)
V
van_rossum_dist() (in module spykeutils.spike_train_metrics)
van_rossum_multiunit_dist() (in module spykeutils.spike_train_metrics)
variance_explained() (in module spykeutils.sorting_quality_assesment)
victor_purpura_dist() (in module spykeutils.spike_train_metrics)
victor_purpura_multiunit_dist() (in module spykeutils.spike_train_metrics)
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